{"database": "atlas", "table": "protocols", "is_view": false, "human_description_en": "where gold_candidate = \"yes\", gold_candidate = \"yes\" and organoid_type = \"cerebral\" sorted by grounding_rate descending", "rows": [["PMC6906116", "10.1038/s41586-019-1289-x", "cerebral", "human", "iPSC", "Geltrex", "mTESR1", "reported", "Velasco", "2019", "Nature", "CC-BY", "yes", 4, 14, 0, 4, 4, 1.0, "tier1_local::gemma3:12b", null, null, "single-cell RNA-seq \u00b7 IHC"]], "truncated": false, "filtered_table_rows_count": 1, "expanded_columns": [], "expandable_columns": [], "columns": ["pmcid", "doi", "organoid_type", "species", "source_cell_type", "matrix", "base_media", "base_media_reporting", "first_author", "year", "journal", "license", "gold_candidate", "n_signaling_factors", "n_supplements", "n_figure_confirmed", "reagents_grounded", "reagents_total", "grounding_rate", "extractor", "passaging", "timeline", "assay_endpoints"], "primary_keys": ["pmcid"], "units": {}, "query": {"sql": "select pmcid, doi, organoid_type, species, source_cell_type, matrix, base_media, base_media_reporting, first_author, year, journal, license, gold_candidate, n_signaling_factors, n_supplements, n_figure_confirmed, reagents_grounded, reagents_total, grounding_rate, extractor, passaging, timeline, assay_endpoints from protocols where \"gold_candidate\" = :p0 and \"gold_candidate\" = :p1 and \"organoid_type\" = :p2 order by grounding_rate desc limit 101", "params": {"p0": "yes", "p1": "yes", "p2": "cerebral"}}, "facet_results": {"organoid_type": {"name": "organoid_type", "type": "column", "hideable": false, "toggle_url": "/atlas/protocols.json?gold_candidate=yes&gold_candidate__exact=yes&organoid_type=cerebral", "results": [{"value": "cerebral", "label": "cerebral", "count": 1, "toggle_url": "http://organoid-protocol-atlas.onrender.com/atlas/protocols.json?gold_candidate=yes&gold_candidate__exact=yes", "selected": true}], "truncated": false}, "source_cell_type": {"name": "source_cell_type", "type": "column", "hideable": false, "toggle_url": "/atlas/protocols.json?gold_candidate=yes&gold_candidate__exact=yes&organoid_type=cerebral", "results": [{"value": "iPSC", "label": "iPSC", "count": 1, "toggle_url": "http://organoid-protocol-atlas.onrender.com/atlas/protocols.json?gold_candidate=yes&gold_candidate__exact=yes&organoid_type=cerebral&source_cell_type=iPSC", "selected": false}], "truncated": false}, "license": {"name": "license", "type": "column", "hideable": false, "toggle_url": "/atlas/protocols.json?gold_candidate=yes&gold_candidate__exact=yes&organoid_type=cerebral", "results": [{"value": "CC-BY", "label": "CC-BY", "count": 1, "toggle_url": "http://organoid-protocol-atlas.onrender.com/atlas/protocols.json?gold_candidate=yes&gold_candidate__exact=yes&organoid_type=cerebral&license=CC-BY", "selected": false}], "truncated": false}, "gold_candidate": {"name": "gold_candidate", "type": "column", "hideable": false, "toggle_url": "/atlas/protocols.json?gold_candidate=yes&gold_candidate__exact=yes&organoid_type=cerebral", "results": [{"value": "yes", "label": "yes", "count": 1, "toggle_url": "http://organoid-protocol-atlas.onrender.com/atlas/protocols.json?gold_candidate__exact=yes&organoid_type=cerebral", "selected": true}], "truncated": false}}, "suggested_facets": [], "next": null, "next_url": null, "private": false, "allow_execute_sql": true, "query_ms": 46.18402197957039, "source": "PMC Open Access + author-manuscript corpus (per-row license in the data)", "license": "MIT"}